Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Tmem214Transmembrane protein 214. (630 aa)    
Predicted Functional Partners:
ogfod3
Urotensin-2 receptor 2.
   
  
 0.816
tmem53
Transmembrane protein 53.
      
 0.777
LOC111191288
Uncharacterized protein.
      
 0.777
tmem70
Transmembrane protein 70.
      
 0.773
rhbdd1
Rhomboid domain containing 1.
      
 0.772
Ckap4
Uncharacterized protein.
      
 0.771
trmt11
tRNA methyltransferase 11 homolog.
      
 0.769
exd2
Exonuclease 3'-5' domain containing 2.
      
 0.769
klhl31
Kelch-like family member 31.
      
 0.769
ndc1
NDC1 transmembrane nucleoporin.
      
 0.768
Your Current Organism:
Astyanax mexicanus
NCBI taxonomy Id: 7994
Other names: A. mexicanus, Mexican tetra, blind cave fish
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