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Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103039728FYVE and coiled-coil domain containing 1a. (1508 aa)    
Predicted Functional Partners:
LOC103037223
RAB7b, member RAS oncogene family.
    
 0.931
LOC103043048
RAB7a, member RAS oncogene family.
    
 0.931
LOC103045023
FYVE and coiled-coil domain containing 1b.
  
  
 
0.903
LOC103042533
Si:dkey-13a21.4.
     
 0.901
Map1lc3b
Microtubule-associated protein 1 light chain 3 beta.
   
 
 0.682
map1lc3a
Microtubule-associated protein 1 light chain 3 alpha.
   
 
 0.682
W5KH13_ASTMX
Mitochondrial calcium uptake 2.
   
 0.513
micu1
Mitochondrial calcium uptake 1.
   
 0.513
LOC103023443
Single-pass membrane protein with aspartate-rich tail 1b.
     
 0.506
smdt1
Single-pass membrane protein with aspartate-rich tail 1a.
     
 0.506
Your Current Organism:
Astyanax mexicanus
NCBI taxonomy Id: 7994
Other names: A. mexicanus, Mexican tetra, blind cave fish
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