Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC103025742LIM domain binding 3b. (388 aa)    
Predicted Functional Partners:
ENSAMXP00000032698
LIM domain binding 3a.
 
 
  0.948
ENSAMXP00000046617
PDZ and LIM domain 5a.
 
 
  0.909
Suox
Sulfite oxidase.
     
  0.858
pdlim7
PDZ and LIM domain 7.
   
 
0.836
LOC103043607
PDZ and LIM domain 5b.
   
 
0.825
ENSAMXP00000053258
PDZ domain-containing protein.
   
 
0.825
LOC103042722
PDZ and LIM domain 3a.
   
 
0.611
pdlim1
PDZ and LIM domain 1 (elfin).
   
 
0.611
LOC103035000
PDZ and LIM domain 3b.
   
 
0.611
LOC103047683
Leupaxin.
    
  0.582
Your Current Organism:
Astyanax mexicanus
NCBI taxonomy Id: 7994
Other names: A. mexicanus, Mexican tetra, blind cave fish
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