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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ARHGAP6Rho GTPase activating protein 6. (390 aa)    
Predicted Functional Partners:
Unc50
Unc-50 homolog (C. elegans).
      
 0.654
kif11
Kinesin family member 11; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.
   
  
 0.596
Aspm
ASH domain-containing protein.
   
   0.593
akap17a
A kinase (PRKA) anchor protein 17A.
      
 0.589
W5LBU2_ASTMX
Ttk protein kinase.
   
    0.569
uxs1
UDP-glucuronate decarboxylase 1.
      
 0.545
rhot2
Mitochondrial Rho GTPase; Mitochondrial GTPase involved in mitochondrial trafficking. Belongs to the mitochondrial Rho GTPase family.
    
 0.508
Nipa2
NIPA magnesium transporter 2.
      
 0.506
espl1
Extra spindle pole bodies like 1, separase.
   
  
 0.492
ndc80
NDC80 kinetochore complex component.
   
    0.479
Your Current Organism:
Astyanax mexicanus
NCBI taxonomy Id: 7994
Other names: A. mexicanus, Mexican tetra, blind cave fish
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