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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SUSD2Sushi domain containing 2. (822 aa)    
Predicted Functional Partners:
ENSAMXP00000042472
Uncharacterized protein.
     
 0.585
fau
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
      
 0.577
ism2
Isthmin 2a.
      
 0.571
gpnmb
Glycoprotein (transmembrane) nmb.
      
 0.527
Tmed7
Transmembrane p24 trafficking protein 7.
      
 0.516
Sptlc2
Serine palmitoyltransferase, long chain base subunit 2a.
      
 0.405
ENSAMXP00000031931
Phosphodiesterase.
      
 0.400
PDE1C
Phosphodiesterase.
      
 0.400
Your Current Organism:
Astyanax mexicanus
NCBI taxonomy Id: 7994
Other names: A. mexicanus, Mexican tetra, blind cave fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.