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The next version of STRING is ready for use in your analyses: updated networks across STRING newly available directed regulatory networks a new typed view showing functional, physical, and regulatory edges in one network new clustering options and cluster-based layouts … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tfap2dTranscription factor AP-2 delta (activating enhancer binding protein 2 delta). (571 aa)    
Predicted Functional Partners:
kctd15
Potassium channel tetramerization domain containing 15.
   
 0.668
LOC103032053
Potassium channel tetramerization domain containing 15a.
   
 0.668
KCTD1
Potassium channel tetramerization domain containing 1.
   
 0.668
LOC103031849
Potassium channel tetramerization domain containing 1.
   
 0.668
W5KM64_ASTMX
YEATS domain containing 4.
    
 0.664
Crebbp
CREB binding protein a.
    
 0.653
Wwox
WW domain containing oxidoreductase.
    
 0.650
cited2
Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2.
    
 0.626
ENSAMXP00000037615
Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 4a.
    
 0.626
Spata4
Spermatogenesis associated 4.
      
 0.579
Your Current Organism:
Astyanax mexicanus
NCBI taxonomy Id: 7994
Other names: A. mexicanus, Mexican tetra, blind cave fish
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