Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Fat3FAT atypical cadherin 3a. (4535 aa)    
Predicted Functional Partners:
fjx1
Four-jointed box kinase 1.
   
 0.931
LIX1L
Limb and CNS expressed 1 like.
   
 0.743
W5K3W4_ASTMX
Arginine-glutamic acid dipeptide (RE) repeats b.
    
 0.712
lix1
Limb and CNS expressed 1.
   
 0.682
W5LRD9_ASTMX
Arginine-glutamic acid dipeptide (RE) repeats a.
    
 0.580
NCSTN
Nicastrin.
   
  0.542
noc2l
NOC2-like nucleolar associated transcriptional repressor.
     
  0.528
psenen
Presenilin enhancer, gamma-secretase subunit.
     
  0.528
W5KTB3_ASTMX
Atrophin 1.
    
 0.519
ENSAMXP00000036743
Uncharacterized protein.
    
 0.510
Your Current Organism:
Astyanax mexicanus
NCBI taxonomy Id: 7994
Other names: A. mexicanus, Mexican tetra, blind cave fish
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