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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Fat3FAT atypical cadherin 3a. (4535 aa)    
Predicted Functional Partners:
LIX1L
Limb and CNS expressed 1 like.
   
 0.722
fjx1
Four-jointed box kinase 1.
   
 
 0.683
W5K3W4_ASTMX
Arginine-glutamic acid dipeptide (RE) repeats b.
    
 0.666
lix1
Limb and CNS expressed 1.
   
 0.658
W5LRD9_ASTMX
Arginine-glutamic acid dipeptide (RE) repeats a.
    
 0.564
W5KTB3_ASTMX
Atrophin 1.
    
 0.519
ENSAMXP00000036743
Uncharacterized protein.
    
 0.519
W5KN59_ASTMX
FAT atypical cadherin 3b.
  
 
0.484
Mtnr1a
Melatonin receptor 1A b; Belongs to the G-protein coupled receptor 1 family.
      
 0.445
W5KSL3_ASTMX
Arrestin, beta 1.
      
 0.412
Your Current Organism:
Astyanax mexicanus
NCBI taxonomy Id: 7994
Other names: A. mexicanus, Mexican tetra, blind cave fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.