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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
uroc1Urocanate hydratase 1. (674 aa)    
Predicted Functional Partners:
LOC103041200
Histidine ammonia-lyase; Belongs to the PAL/histidase family.
 
 
 0.984
amdhd1
Amidohydrolase domain containing 1.
  
 
 0.981
W5KSF7_ASTMX
Histidine ammonia-lyase; Belongs to the PAL/histidase family.
 
 
 0.843
LOC103042318
Si:ch1073-416d2.3; Belongs to the serpin family.
   
  0.842
ftcd
Formimidoyltransferase cyclodeaminase.
  
  
 0.753
LOC103045604
Threonine aldolase 1.
      
 0.533
Bcap31
B cell receptor associated protein 31.
      
 0.499
kng1
Uncharacterized protein.
   
   0.462
serpinc1
Serpin peptidase inhibitor, clade C (antithrombin), member 1; Belongs to the serpin family.
   
  0.426
nme4
Nucleoside diphosphate kinase.
   
 0.425
Your Current Organism:
Astyanax mexicanus
NCBI taxonomy Id: 7994
Other names: A. mexicanus, Mexican tetra, blind cave fish
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