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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
W5K2Z9_ASTMXPotassium intermediate/small conductance calcium-activated channel, subfamily N, member 3. (718 aa)    
Predicted Functional Partners:
etv1
Ets variant 1.
   
  
 0.581
LOC103026962
Gamma-aminobutyric acid (GABA) A receptor, alpha 1; Belongs to the ligand-gated ion channel (TC 1.A.9) family.
   
  
 0.562
ENSAMXP00000033671
Uncharacterized protein; Belongs to the calmodulin family.
    
 
 0.534
ENSAMXP00000033983
Calmodulin 3b (phosphorylase kinase, delta); Belongs to the calmodulin family.
    
 
 0.534
calm2
Calmodulin 2b, (phosphorylase kinase, delta); Belongs to the calmodulin family.
    
 
 0.534
calm2-2
Calmodulin 2a (phosphorylase kinase, delta); Belongs to the calmodulin family.
    
 
 0.534
calm2-3
Calmodulin.
    
 
 0.534
calm2-4
Calmodulin 3a (phosphorylase kinase, delta); Belongs to the calmodulin family.
    
 
 0.534
Thrb
Thyroid hormone receptor beta.
      
 0.532
bdnf
Brain-derived neurotrophic factor; Promotes the survival of neuronal populations that are all located either in the central nervous system or directly connected to it; Belongs to the NGF-beta family.
      
 0.525
Your Current Organism:
Astyanax mexicanus
NCBI taxonomy Id: 7994
Other names: A. mexicanus, Mexican tetra, blind cave fish
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