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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
prpf6PRP6 pre-mRNA processing factor 6 homolog (S. cerevisiae). (974 aa)    
Predicted Functional Partners:
eftud2
Elongation factor Tu GTP binding domain containing 2.
   
 0.999
snrnp200
Small nuclear ribonucleoprotein 200 (U5).
   
 0.999
prpf8
Pre-mRNA processing factor 8.
   
 0.999
txnl4a
Thioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family.
    
 0.999
snrnp40
Small nuclear ribonucleoprotein 40 (U5).
   
 0.999
ddx23
DEAD (Asp-Glu-Ala-Asp) box polypeptide 23.
   
 0.998
sart1
Spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP.
   
 0.997
snrpd3
Small nuclear ribonucleoprotein Sm D3.
   
 0.997
W5KH70_ASTMX
PRP4 pre-mRNA processing factor 4 homolog (yeast).
   
 0.996
prpf3
PRP3 pre-mRNA processing factor 3 homolog (yeast).
   
 0.996
Your Current Organism:
Astyanax mexicanus
NCBI taxonomy Id: 7994
Other names: A. mexicanus, Mexican tetra, blind cave fish
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