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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ccdc150Ubiquitin specific peptidase 16. (920 aa)    
Predicted Functional Partners:
ccdc77
Coiled-coil domain containing 77.
   
  
 0.590
W5KPZ4_ASTMX
General transcription factor IIIC, polypeptide 3.
      
 0.583
c22h3orf14
Si:dkey-274m17.3.
      
 0.580
slc49a4
Solute carrier family 49 member 4.
      
 0.578
W5KSF8_ASTMX
Glutathione S-transferase, C-terminal domain containing.
      
 0.578
ccdc34
Zgc:153293.
      
 0.578
Carnmt1
Carnosine N-methyltransferase 1.
      
 0.577
ENSAMXP00000033950
IQ motif containing K.
      
 0.577
cep85
Centrosomal protein 85.
      
 0.577
znf367
Zinc finger protein 367.
      
 0.573
Your Current Organism:
Astyanax mexicanus
NCBI taxonomy Id: 7994
Other names: A. mexicanus, Mexican tetra, blind cave fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.