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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
W5K347_ASTMXMyosin Ic, paralog a; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family. (1046 aa)    
Predicted Functional Partners:
baz1b
Bromodomain adjacent to zinc finger domain, 1B.
    
  0.607
polr1e
RNA polymerase I subunit E.
    
  0.573
sf3b1
Splicing factor 3b, subunit 1.
     
 0.552
ddx21
DEAD (Asp-Glu-Ala-Asp) box helicase 21.
    
  0.552
smarca5
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5.
    
 0.548
LOC103034185
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1.
    
 0.548
dek
DEK proto-oncogene.
     
 0.547
ENSAMXP00000033671
Uncharacterized protein; Belongs to the calmodulin family.
    
 0.541
ENSAMXP00000033983
Calmodulin 3b (phosphorylase kinase, delta); Belongs to the calmodulin family.
    
 0.541
calm2
Calmodulin 2b, (phosphorylase kinase, delta); Belongs to the calmodulin family.
    
 0.541
Your Current Organism:
Astyanax mexicanus
NCBI taxonomy Id: 7994
Other names: A. mexicanus, Mexican tetra, blind cave fish
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