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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103045467Thymine DNA glycosylase, tandem duplicate 2. (409 aa)    
Predicted Functional Partners:
W5KC33_ASTMX
Ubiquitin-like domain-containing protein.
   
 0.945
LOC103043944
Thymine DNA glycosylase, tandem duplicate 1.
  
  
 
0.903
sumo2
Small ubiquitin-related modifier.
   
 0.774
LOC103045390
Small ubiquitin-related modifier.
   
 0.774
ENSAMXP00000050817
Small ubiquitin like modifier 3a.
   
 0.774
apex1
DNA-(apurinic or apyrimidinic site) lyase; Initiates repair of AP sites in DNA by catalyzing hydrolytic incision of the phosphodiester backbone immediately adjacent to the damage, generating a single-strand break with 5'-deoxyribose phosphate and 3'-hydroxyl ends.
  
 
 0.745
Crebbp
CREB binding protein a.
    
 
 0.722
W5K790_ASTMX
Nuclear factor of activated T cells 2 interacting protein.
   
 0.678
LOC103029138
UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.
   
 0.649
LOC103025754
Ubiquitin-conjugating enzyme E2Ia; Belongs to the ubiquitin-conjugating enzyme family.
   
 0.649
Your Current Organism:
Astyanax mexicanus
NCBI taxonomy Id: 7994
Other names: A. mexicanus, Mexican tetra, blind cave fish
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