ro60 protein (Astyanax mexicanus) - STRING interaction network

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second shell of interactors

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Known Interactions

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Predicted Interactions

gene neighborhood

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protein homology

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[Homology]

Score

ro60

Ro60, Y RNA binding protein. (542 aa)

Predicted Functional Partners:

ssb

0.820

xpot

0.566

snrpc

0.565

W5LHJ1_ASTMX

0.532

Cdt1

0.502

rnaseh2b

0.445

rwdd2b

0.440

rtca

0.430

exosc10

0.426

W5K288_ASTMX

0.423

Your Current Organism:

Astyanax mexicanus

NCBI taxonomy Id: 7994
Other names: A. mexicanus, Mexican tetra, blind cave fish

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Cdt1	rnaseh2b	ENSAMXP00000011212	ENSAMXP00000014859	Chromatin licensing and DNA replication factor 1.	Ribonuclease H2, subunit B.	0.527
Cdt1	ro60	ENSAMXP00000011212	ENSAMXP00000002159	Chromatin licensing and DNA replication factor 1.	Ro60, Y RNA binding protein.	0.502
W5K288_ASTMX	ro60	ENSAMXP00000001698	ENSAMXP00000002159	Nucleolin.	Ro60, Y RNA binding protein.	0.423
W5K288_ASTMX	ssb	ENSAMXP00000001698	ENSAMXP00000012958	Nucleolin.	Small RNA binding exonuclease protection factor La.	0.666
W5LHJ1_ASTMX	ro60	ENSAMXP00000019303	ENSAMXP00000002159	Histidyl-tRNA synthetase.	Ro60, Y RNA binding protein.	0.532
exosc10	ro60	ENSAMXP00000014930	ENSAMXP00000002159	Exosome component 10.	Ro60, Y RNA binding protein.	0.426
exosc10	rtca	ENSAMXP00000014930	ENSAMXP00000041820	Exosome component 10.	RNA 3'-terminal phosphate cyclase.	0.892
rnaseh2b	Cdt1	ENSAMXP00000014859	ENSAMXP00000011212	Ribonuclease H2, subunit B.	Chromatin licensing and DNA replication factor 1.	0.527
rnaseh2b	ro60	ENSAMXP00000014859	ENSAMXP00000002159	Ribonuclease H2, subunit B.	Ro60, Y RNA binding protein.	0.445
ro60	Cdt1	ENSAMXP00000002159	ENSAMXP00000011212	Ro60, Y RNA binding protein.	Chromatin licensing and DNA replication factor 1.	0.502
ro60	W5K288_ASTMX	ENSAMXP00000002159	ENSAMXP00000001698	Ro60, Y RNA binding protein.	Nucleolin.	0.423
ro60	W5LHJ1_ASTMX	ENSAMXP00000002159	ENSAMXP00000019303	Ro60, Y RNA binding protein.	Histidyl-tRNA synthetase.	0.532
ro60	exosc10	ENSAMXP00000002159	ENSAMXP00000014930	Ro60, Y RNA binding protein.	Exosome component 10.	0.426
ro60	rnaseh2b	ENSAMXP00000002159	ENSAMXP00000014859	Ro60, Y RNA binding protein.	Ribonuclease H2, subunit B.	0.445
ro60	rtca	ENSAMXP00000002159	ENSAMXP00000041820	Ro60, Y RNA binding protein.	RNA 3'-terminal phosphate cyclase.	0.430
ro60	rwdd2b	ENSAMXP00000002159	ENSAMXP00000040541	Ro60, Y RNA binding protein.	RWD domain containing 2B.	0.440
ro60	snrpc	ENSAMXP00000002159	ENSAMXP00000031401	Ro60, Y RNA binding protein.	U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. SNRPC/U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. Belongs to the U1 [...]	0.565
ro60	ssb	ENSAMXP00000002159	ENSAMXP00000012958	Ro60, Y RNA binding protein.	Small RNA binding exonuclease protection factor La.	0.820
ro60	xpot	ENSAMXP00000002159	ENSAMXP00000013936	Ro60, Y RNA binding protein.	Exportin-T; tRNA nucleus export receptor which facilitates tRNA translocation across the nuclear pore complex. Belongs to the exportin family.	0.566
rtca	exosc10	ENSAMXP00000041820	ENSAMXP00000014930	RNA 3'-terminal phosphate cyclase.	Exosome component 10.	0.892