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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103038240Ankyrin repeat domain 50-like. (1426 aa)    
Predicted Functional Partners:
ppp6c
Serine/threonine-protein phosphatase.
    
 0.643
W5L9W4_ASTMX
Protein phosphatase 6, regulatory subunit 2a.
    
 0.517
LOC103025683
Protein phosphatase 6, regulatory subunit 2b.
    
 0.517
ppp6r3
Protein phosphatase 6, regulatory subunit 3.
    
 0.517
chuk
Component of inhibitor of nuclear factor kappa B kinase complex.
    
 0.489
W5L0T6_ASTMX
Inhibitor of nuclear factor kappa B kinase subunit beta.
    
 0.489
Ift81
Intraflagellar transport 81 homolog.
    
 0.479
skp1
S-phase kinase-associated protein 1; Belongs to the SKP1 family.
   
 0.464
ift88
Intraflagellar transport 88 homolog.
    
 0.464
ift52
Intraflagellar transport 52 homolog (Chlamydomonas).
    
 0.462
Your Current Organism:
Astyanax mexicanus
NCBI taxonomy Id: 7994
Other names: A. mexicanus, Mexican tetra, blind cave fish
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