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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
W5K3M1_ASTMXTenascin N. (834 aa)    
Predicted Functional Partners:
LOC103047860
CD40 ligand; Belongs to the tumor necrosis factor family.
    
   0.700
Bcan
Brevican.
   
  0.669
W5K2N2_ASTMX
Si:dkey-21a6.5.
    
 0.645
W5K7P0_ASTMX
Si:ch211-117m20.4.
    
 0.645
svep1
Sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1.
    
0.645
Vcan
Versican b.
    
 0.606
tnr
Tenascin R (restrictin, janusin).
     
0.604
LOC103021642
Aggrecan a.
   
  0.568
ENSAMXP00000027865
Link domain-containing protein.
   
  0.568
ENSAMXP00000033104
C-type lectin domain-containing protein.
   
  0.568
Your Current Organism:
Astyanax mexicanus
NCBI taxonomy Id: 7994
Other names: A. mexicanus, Mexican tetra, blind cave fish
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