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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cdan1Codanin 1. (1315 aa)    
Predicted Functional Partners:
LOC103026007
Anti-silencing function 1Ba histone chaperone.
    
 
 0.785
c9h15orf41
Zgc:154061.
    
 
 0.596
PRDM15
PR/SET domain 15.
   
    0.594
wdfy3
WD repeat and FYVE domain containing 3.
      
 0.575
zwilch
Zwilch kinetochore protein.
      
 0.575
Ipo4
Importin 4.
    
 
 0.529
LOC103023546
Interleukin 13 receptor, alpha 2.
      
 0.514
LOC103026991
Stereocilin 1.
    
 
 0.493
catsper2
Ion_trans domain-containing protein.
      
 0.445
kif23
Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.
      
 0.435
Your Current Organism:
Astyanax mexicanus
NCBI taxonomy Id: 7994
Other names: A. mexicanus, Mexican tetra, blind cave fish
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