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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103029094PHD finger protein 20, b. (1017 aa)    
Predicted Functional Partners:
mcrs1
Microspherule protein 1.
   
 0.937
kansl2
KAT8 regulatory NSL complex subunit 2.
    
 0.911
kansl3
KAT8 regulatory NSL complex subunit 3.
    
 0.901
tex30
Testis expressed 30.
    
 0.787
Suds3
SDS3 homolog, SIN3A corepressor complex component.
   
 
 0.781
hcfc1
Host cell factor C1b.
    
 0.753
hcfc2
Host cell factor C2.
    
 0.753
W5LPR8_ASTMX
KAT8 regulatory NSL complex subunit 1a.
    
 0.752
LOC103023455
KAT8 regulatory NSL complex subunit 1b.
    
 0.752
kansl1l
KAT8 regulatory NSL complex subunit 1-like.
    
 0.752
Your Current Organism:
Astyanax mexicanus
NCBI taxonomy Id: 7994
Other names: A. mexicanus, Mexican tetra, blind cave fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.