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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tmem198Transmembrane protein 198b. (368 aa)    
Predicted Functional Partners:
Apaf1
Apoptotic peptidase activating factor 1.
    
 0.769
appl1
Adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 1.
    
 0.652
Birc6
Baculoviral IAP repeat containing 6.
   
 0.627
ENSAMXP00000040314
UBIQUITIN_CONJUGAT_2 domain-containing protein.
   
 0.627
LOC103040542
Cytochrome c, somatic b; Electron carrier protein. The oxidized form of the cytochrome c heme group can accept an electron from the heme group of the cytochrome c1 subunit of cytochrome reductase. Cytochrome c then transfers this electron to the cytochrome oxidase complex, the final protein carrier in the mitochondrial electron-transport chain.
   
 0.543
mib2
Mindbomb E3 ubiquitin protein ligase 2.
    
 0.533
cenpn
Centromere protein N.
   
 0.510
cenpq
Uncharacterized protein.
   
 0.488
ripk4
Receptor-interacting serine-threonine kinase 4.
    
 0.483
cenpm
Proliferation associated nuclear element.
   
 0.478
Your Current Organism:
Astyanax mexicanus
NCBI taxonomy Id: 7994
Other names: A. mexicanus, Mexican tetra, blind cave fish
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