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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
got1Aspartate aminotransferase. (410 aa)    
Predicted Functional Partners:
mdh2
Malate dehydrogenase.
   
 0.983
got2
Aspartate aminotransferase.
  
0.975
LOC103024912
4-hydroxyphenylpyruvate dioxygenase.
  
 
 0.970
LOC103021345
4-hydroxyphenylpyruvate dioxygenase.
  
 
 0.970
Sdha
Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial; Flavoprotein (FP) subunit of succinate dehydrogenase (SDH) that is involved in complex II of the mitochondrial electron transport chain and is responsible for transferring electrons from succinate to ubiquinone (coenzyme Q).
  
 0.970
gpt2
Glutamic pyruvate transaminase (alanine aminotransferase) 2.
   
 0.965
LOC103033607
Malate dehydrogenase.
   
 0.963
LOC103036835
Malate dehydrogenase.
   
 0.963
tat
Tyrosine aminotransferase; Transaminase involved in tyrosine breakdown. Converts tyrosine to p-hydroxyphenylpyruvate.
   
 0.960
ldhb
L-lactate dehydrogenase; Belongs to the LDH/MDH superfamily.
   
 0.957
Your Current Organism:
Astyanax mexicanus
NCBI taxonomy Id: 7994
Other names: A. mexicanus, Mexican tetra, blind cave fish
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