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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fbxo38F-box protein 38. (1104 aa)    
Predicted Functional Partners:
trappc11
Trafficking protein particle complex 11.
   
    0.720
ENSAMXP00000052931
Si:ch211-225h24.2.
      
 0.693
Mon2
MON2 homolog, regulator of endosome-to-Golgi trafficking.
   
  
 0.635
Trip12
Thyroid hormone receptor interactor 12.
      
 0.578
ENSAMXP00000039594
Uncharacterized protein.
      
 0.578
cdc40
Cell division cycle 40 homolog (S. cerevisiae).
      
 0.572
LOC103039099
WD repeat domain 48b.
   
    0.572
wdr48
WD repeat domain 48a.
   
    0.572
smoc2
SPARC related modular calcium binding 2.
      
 0.563
LOC111194478
Cullin 1a; Belongs to the cullin family.
    
 
 0.516
Your Current Organism:
Astyanax mexicanus
NCBI taxonomy Id: 7994
Other names: A. mexicanus, Mexican tetra, blind cave fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.