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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
riok2RIO kinase 2 (yeast). (519 aa)    
Predicted Functional Partners:
W5K6T9_ASTMX
LTV1 ribosome biogenesis factor.
   
 0.999
Nob1
RNA-binding protein NOB1; May play a role in mRNA degradation. Belongs to the NOB1 family.
   
 0.999
rps2
Ribosomal protein S2; Belongs to the universal ribosomal protein uS5 family.
    
 0.998
bysl
Bystin-like.
   
 0.997
rps3
Ribosomal protein S3; Belongs to the universal ribosomal protein uS3 family.
    
 0.997
RPS20
Ribosomal protein S20.
   
 0.996
Rps15
Ribosomal protein S15; Belongs to the universal ribosomal protein uS19 family.
    
 0.995
rps5
Ribosomal protein S5; Belongs to the universal ribosomal protein uS7 family.
    
 0.995
rps13
Ribosomal protein S13; Belongs to the universal ribosomal protein uS15 family.
    
 0.994
krr1
KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.
   
 
 0.993
Your Current Organism:
Astyanax mexicanus
NCBI taxonomy Id: 7994
Other names: A. mexicanus, Mexican tetra, blind cave fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.