Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
rufy1RUN and FYVE domain containing 1. (705 aa)    
Predicted Functional Partners:
Rufy2
RUN and FYVE domain containing 2.
    
  0.998
rab4a
RAB4a, member RAS oncogene family.
    
 0.976
rufy3
RUN and FYVE domain containing 3.
    
  0.966
LOC103022831
RAB4B, member RAS oncogene family.
    
 0.933
ENSAMXP00000033661
Uncharacterized protein.
    
 0.810
LOC103026976
RAB14, member RAS oncogene family.
    
 0.810
LOC103034714
RAB39B, member RAS oncogene family.
    
  0.771
c13h17orf67
Si:dkey-31g6.6.
      
 0.770
Diexf
UTP25 small subunit processor component.
    
   0.748
ENSAMXP00000049828
Uncharacterized protein.
    
   0.748
Your Current Organism:
Astyanax mexicanus
NCBI taxonomy Id: 7994
Other names: A. mexicanus, Mexican tetra, blind cave fish
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