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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
wdr82WD repeat domain 82. (313 aa)    
Predicted Functional Partners:
cpsf3
Cleavage and polyadenylation specific factor 3.
   
 0.996
cpsf2
Cleavage and polyadenylation specificity factor subunit 2.
   
 0.995
cpsf4
Cleavage and polyadenylation specific factor 4.
   
 0.995
ENSAMXP00000045063
Symplekin.
   
 
 0.992
W5KMF3_ASTMX
Cleavage and polyadenylation specific factor 1.
    
 
 0.988
WDR33
WD repeat domain 33.
   
 
 0.986
ssu72
SSU72 homolog, RNA polymerase II CTD phosphatase.
   
 0.982
ash2l
Ash2 like, histone lysine methyltransferase complex subunit.
   
 0.973
Rbbp5
Retinoblastoma binding protein 5.
   
 0.970
Rbbp6
Uncharacterized protein.
    
 
 0.963
Your Current Organism:
Astyanax mexicanus
NCBI taxonomy Id: 7994
Other names: A. mexicanus, Mexican tetra, blind cave fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.