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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
W5K4X3_ASTMXC-type lectin domain containing 16A. (903 aa)    
Predicted Functional Partners:
Wdr44
WD repeat domain 44.
      
 0.693
aqr
Aquarius intron-binding spliceosomal factor.
      
 0.693
rnf41
Ring finger protein 41.
    
 
 0.618
dexi
Dexi homolog (mouse).
      
 0.577
ppat
Amidophosphoribosyltransferase; In the C-terminal section; belongs to the purine/pyrimidine phosphoribosyltransferase family.
      
 0.563
eif4a3
Eukaryotic translation initiation factor 4A3; Belongs to the DEAD box helicase family.
      
 0.548
atox1
Antioxidant 1 copper chaperone.
      
 0.515
tmem39a
Transmembrane protein 39A.
      
 0.478
vps33b
VPS33B late endosome and lysosome associated; Belongs to the STXBP/unc-18/SEC1 family.
    
 
 0.467
vps39
VPS39 subunit of HOPS complex.
   
  
 0.464
Your Current Organism:
Astyanax mexicanus
NCBI taxonomy Id: 7994
Other names: A. mexicanus, Mexican tetra, blind cave fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.