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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rab40cRAB40c, member RAS oncogene family. (282 aa)    
Predicted Functional Partners:
eloc
Elongin C paralog b; Belongs to the SKP1 family.
    
 
 0.702
ENSAMXP00000038452
CHM Rab escort protein.
    
 0.673
rabggtb
Geranylgeranyl transferase type-2 subunit beta; Catalyzes the transfer of a geranylgeranyl moiety from geranylgeranyl diphosphate to both cysteines of proteins with the C- terminal sequence -XXCC, -XCXC and -CCXX.
    
 0.672
cul5
Cullin 5a; Belongs to the cullin family.
    
 
 0.654
W5K7J1_ASTMX
Methenyltetrahydrofolate synthetase domain containing.
   
    0.645
Rilpl2
Rab interacting lysosomal protein-like 2.
    
 
 0.621
rab3ip
RAB3A interacting protein (rabin3).
    
 0.611
rab3il1
RAB3A interacting protein (rabin3)-like 1.
    
 0.611
Wdr6
WD repeat domain 6.
   
    0.594
LOC103026007
Anti-silencing function 1Ba histone chaperone.
   
    0.590
Your Current Organism:
Astyanax mexicanus
NCBI taxonomy Id: 7994
Other names: A. mexicanus, Mexican tetra, blind cave fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.