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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rrn3RRN3 homolog, RNA polymerase I transcription factor. (610 aa)    
Predicted Functional Partners:
Twistnb
TWIST neighbor.
   
 0.998
polr1b
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 0.997
polr1c
RNA polymerase I and III subunit C.
   
 0.995
polr1e
RNA polymerase I subunit E.
   
 0.994
znrd1
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.
   
 0.986
LOC103043816
RNA polymerase I and III subunit D.
   
 0.983
POLR2E
RNA polymerase II subunit E.
    
 0.979
W5KWB2_ASTMX
Uncharacterized protein.
   
 0.978
Polr1a
RNA_pol_Rpb1_1 domain-containing protein.
   
 0.978
LOC103039849
CD3e molecule, epsilon associated protein.
   
 0.977
Your Current Organism:
Astyanax mexicanus
NCBI taxonomy Id: 7994
Other names: A. mexicanus, Mexican tetra, blind cave fish
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