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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103038298AXH domain-containing protein. (603 aa)    
Predicted Functional Partners:
rbpj
Recombination signal binding protein for immunoglobulin kappa J region b.
    
 0.913
LOC103029567
Recombination signal binding protein for immunoglobulin kappa J region a.
    
 0.913
Rbpjl
Recombination signal binding protein for immunoglobulin kappa J region-like.
    
 0.909
Cic
Capicua transcriptional repressor b.
    
 
 0.686
ENSAMXP00000054539
Capicua transcriptional repressor a.
    
 
 0.686
bbx
BBX high mobility group box domain containing.
    
 
 0.447
rbm17
RNA binding motif protein 17.
    
 
 0.445
ENSAMXP00000029938
Ataxin 2.
   
 
 0.442
pqbp1
Polyglutamine binding protein 1.
    
 
 0.417
coil
Coilin p80.
    
 
 0.410
Your Current Organism:
Astyanax mexicanus
NCBI taxonomy Id: 7994
Other names: A. mexicanus, Mexican tetra, blind cave fish
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