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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sdf4Stromal cell derived factor 4. (356 aa)    
Predicted Functional Partners:
s100b
S100 calcium binding protein, beta (neural); Belongs to the S-100 family.
      
 0.728
LOC103030727
Parvalbumin 6; Belongs to the parvalbumin family.
      
 0.580
CALML6
Calmodulin like 6.
      
 0.519
LOC103038860
Amino acid transporter.
      
 0.477
LOC103022085
S100 calcium binding protein W.
      
 0.470
W5KLY7_ASTMX
Estrogen receptor 2b.
      
 0.440
LOC103036615
Parvalbumin 7; Belongs to the parvalbumin family.
      
 0.408
Star
Steroidogenic acute regulatory protein, mitochondrial; Plays a key role in steroid hormone synthesis by enhancing the metabolism of cholesterol into pregnenolone. Mediates the transfer of cholesterol from the outer mitochondrial membrane to the inner mitochondrial membrane where it is cleaved to pregnenolone.
    
 
 0.407
UNC79
Unc-79 homolog, NALCN channel complex subunit.
      
 0.404
Your Current Organism:
Astyanax mexicanus
NCBI taxonomy Id: 7994
Other names: A. mexicanus, Mexican tetra, blind cave fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.