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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rnf19bRBR-type E3 ubiquitin transferase. (706 aa)    
Predicted Functional Partners:
LOC103024125
Ubiquitin-conjugating enzyme E2L 3a; Belongs to the ubiquitin-conjugating enzyme family.
   
 0.694
rnf216
Ring finger protein 216.
    
 0.643
rps27a
Ribosomal protein S27a.
    
 0.629
Trip12
Thyroid hormone receptor interactor 12.
   
 
 0.576
ttc13
Tetratricopeptide repeat domain 13.
    
 0.563
ENSAMXP00000039594
Uncharacterized protein.
   
 
 0.558
uba52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
    
  0.539
ENSAMXP00000043505
Ubiquitin-like domain-containing protein.
    
  0.539
Birc6
Baculoviral IAP repeat containing 6.
    
 0.532
ENSAMXP00000040314
UBIQUITIN_CONJUGAT_2 domain-containing protein.
    
 0.532
Your Current Organism:
Astyanax mexicanus
NCBI taxonomy Id: 7994
Other names: A. mexicanus, Mexican tetra, blind cave fish
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