close STRING v12.5 is now available!
The next version of STRING is ready for use in your analyses: updated networks across STRING newly available directed regulatory networks a new typed view showing functional, physical, and regulatory edges in one network new clustering options and cluster-based layouts … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cdv3Carnitine deficiency-associated gene expressed in ventricle 3. (234 aa)    
Predicted Functional Partners:
W5KJ71_ASTMX
Si:ch211-39k3.2.
      
 0.576
rnf7
Ring finger protein 7.
      
 0.571
tmem108
Transmembrane protein 108.
      
 0.570
dap
Death-associated protein.
      
 0.545
LOC103031777
Peptidase_M24 domain-containing protein.
   
    0.449
LOC103027720
Proliferation-associated 2G4, a.
   
    0.449
trub1
TruB pseudouridine (psi) synthase family member 1.
   
  
 0.416
dkc1
Dyskeratosis congenita 1, dyskerin.
   
  
 0.416
BFSP1
Beaded filament structural protein 1; Belongs to the intermediate filament family.
      
 0.402
Your Current Organism:
Astyanax mexicanus
NCBI taxonomy Id: 7994
Other names: A. mexicanus, Mexican tetra, blind cave fish
Server load: low (32%) [HD]