Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
cdv3Carnitine deficiency-associated gene expressed in ventricle 3. (234 aa)    
Predicted Functional Partners:
rnf7
Ring finger protein 7.
      
 0.691
LOC103031777
Peptidase_M24 domain-containing protein.
   
  
 0.577
LOC103027720
Proliferation-associated 2G4, a.
   
  
 0.577
W5KJ71_ASTMX
Si:ch211-39k3.2.
      
 0.536
dap
Death-associated protein.
      
 0.523
trub1
TruB pseudouridine (psi) synthase family member 1.
   
  
 0.453
dkc1
Dyskeratosis congenita 1, dyskerin.
   
  
 0.453
LOC103030193
GRB10 interacting GYF protein 1b.
      
 0.431
gigyf1
GRB10 interacting GYF protein 1a.
      
 0.431
pccb
Propionyl-CoA carboxylase subunit beta.
      
 0.431
Your Current Organism:
Astyanax mexicanus
NCBI taxonomy Id: 7994
Other names: A. mexicanus, Mexican tetra, blind cave fish
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