STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cmtm4CKLF-like MARVEL transmembrane domain containing 4. (206 aa)    
Predicted Functional Partners:
cmtm3
CKLF-like MARVEL transmembrane domain containing 3.
      
 0.666
CKLF
Chemokine like factor.
      
0.650
Cmtm6
CKLF-like MARVEL transmembrane domain containing 6.
    
 
0.535
ENSAMXP00000043480
RNA polymerase II subunit M.
      
 0.533
dync1li2
Dynein light intermediate chain; Acts as one of several non-catalytic accessory components of the cytoplasmic dynein 1 complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein 1 acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. May play a role in binding dynein to membranous organelles or chromosomes.
 
    
 0.493
ENSAMXP00000051723
Family with sequence similarity 168 member B.
      
 0.483
nhsl2
NHS-like 2.
      
 0.445
Ap1ar
Adaptor related protein complex 1 associated regulatory protein.
      
 0.441
cmtm7
CKLF-like MARVEL transmembrane domain containing 7.
      
0.424
mocs1
Molybdenum cofactor synthesis 1.
      
 0.420
Your Current Organism:
Astyanax mexicanus
NCBI taxonomy Id: 7994
Other names: A. mexicanus, Mexican tetra, blind cave fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.