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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cdh23Cadherin-related 23. (2739 aa)    
Predicted Functional Partners:
ENSAMXP00000043281
Protocadherin-related 15a.
   
0.900
Pcdh15
Protocadherin-related 15b.
   
0.873
Ush1c
Usher syndrome 1C.
   
 
 0.870
LOC103025218
Uncharacterized protein.
   
0.753
cdhr5
Uncharacterized protein.
   
0.753
LOC103034575
Catenin, beta 2.
    
 0.542
W5KDJ8_ASTMX
Junction plakoglobin b.
    
 0.542
LOC103045821
Junction plakoglobin a.
    
 0.542
ctnnb1
Catenin (cadherin-associated protein), beta 1.
    
 0.542
Adgrv1
Adhesion G protein-coupled receptor V1; Belongs to the G-protein coupled receptor 2 family.
      
 0.497
Your Current Organism:
Astyanax mexicanus
NCBI taxonomy Id: 7994
Other names: A. mexicanus, Mexican tetra, blind cave fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.