Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Cdh23Cadherin-related 23. (2739 aa)    
Predicted Functional Partners:
Pcdh15
Protocadherin-related 15b.
   
0.971
Ush1c
Usher syndrome 1C.
   
 
 0.937
LOC103025218
Uncharacterized protein.
   
0.922
cdhr5
Uncharacterized protein.
   
0.922
ENSAMXP00000043281
Protocadherin-related 15a.
   
0.876
LOC111196032
Uncharacterized protein.
   
 0.768
Ctnna2
Catenin (cadherin-associated protein), alpha 2.
   
 0.768
LOC103026956
Catenin (cadherin-associated protein), alpha 1.
   
 0.768
LOC103047521
Catenin alpha 2.
   
 0.768
ENSAMXP00000045943
Uncharacterized protein.
   
 0.768
Your Current Organism:
Astyanax mexicanus
NCBI taxonomy Id: 7994
Other names: A. mexicanus, Mexican tetra, blind cave fish
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