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The next version of STRING is ready for use in your analyses: updated networks across STRING newly available directed regulatory networks a new typed view showing functional, physical, and regulatory edges in one network new clustering options and cluster-based layouts … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
USP34Ubiquitin specific peptidase 34; Belongs to the peptidase C19 family. (2749 aa)    
Predicted Functional Partners:
UBB
Ubiquitin B.
   
 0.944
rps27a
Ribosomal protein S27a.
   
 0.943
uba52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
    
 0.926
Trip12
Thyroid hormone receptor interactor 12.
   
 
 0.907
LOC103022779
Ash1 (absent, small, or homeotic)-like (Drosophila).
   
 
 0.796
LOC103036607
Bromo domain-containing protein.
   
 
 0.796
ENSAMXP00000049677
PHD finger protein 3.
   
 
  0.786
Smg1
SMG1 nonsense mediated mRNA decay associated PI3K related kinase; Belongs to the PI3/PI4-kinase family.
   
   0.770
setd2
SET domain containing 2, histone lysine methyltransferase.
   
 
 0.769
ENSAMXP00000039594
Uncharacterized protein.
   
 
 0.769
Your Current Organism:
Astyanax mexicanus
NCBI taxonomy Id: 7994
Other names: A. mexicanus, Mexican tetra, blind cave fish
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