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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cdhr2Uncharacterized protein. (948 aa)    
Predicted Functional Partners:
Ush1c
Usher syndrome 1C.
   
 
 0.831
ENSAMXP00000043281
Protocadherin-related 15a.
   
0.798
Pcdh15
Protocadherin-related 15b.
   
0.796
LOC103025218
Uncharacterized protein.
   
0.753
cdhr5
Uncharacterized protein.
   
 0.753
svep1
Sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1.
    
 0.610
LOC103034575
Catenin, beta 2.
    
 0.542
W5KDJ8_ASTMX
Junction plakoglobin b.
    
 0.542
LOC103045821
Junction plakoglobin a.
    
 0.542
ctnnb1
Catenin (cadherin-associated protein), beta 1.
    
 0.542
Your Current Organism:
Astyanax mexicanus
NCBI taxonomy Id: 7994
Other names: A. mexicanus, Mexican tetra, blind cave fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.