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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103031606RBR-type E3 ubiquitin transferase. (527 aa)    
Predicted Functional Partners:
LOC103024125
Ubiquitin-conjugating enzyme E2L 3a; Belongs to the ubiquitin-conjugating enzyme family.
   
 0.953
Rbx1
Ring-box 1, E3 ubiquitin protein ligase.
    
 0.916
rps27a
Ribosomal protein S27a.
    
 0.908
uba52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
    
  0.840
UBB
Ubiquitin B.
    
 0.821
LOC103040682
NEDD8 ubiquitin like modifier.
    
 0.809
LOC103044361
NEDD8 ubiquitin like modifier, like.
    
 0.809
LOC111194478
Cullin 1a; Belongs to the cullin family.
   
 0.779
cul1
Cullin 1b; Belongs to the cullin family.
   
 0.779
W5KX87_ASTMX
Cullin 3a; Belongs to the cullin family.
   
 0.728
Your Current Organism:
Astyanax mexicanus
NCBI taxonomy Id: 7994
Other names: A. mexicanus, Mexican tetra, blind cave fish
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