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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103044870Uncharacterized protein. (91 aa)    
Predicted Functional Partners:
cmc2
COX assembly mitochondrial protein.
   
 
 0.695
sdhaf4
Succinate dehydrogenase complex assembly factor 4.
      
 0.692
ENSAMXP00000030181
LYR motif containing 7.
      
 0.675
ENSAMXP00000041831
Cytochrome c oxidase copper chaperone COX17.
    
 0.673
chchd4
Coiled-coil-helix-coiled-coil-helix domain containing 4a.
   
 
 0.641
LOC103022513
Cytochrome c oxidase assembly factor 6.
   
 
 0.623
ssbp1
Single-stranded DNA binding protein 1.
    
 
 0.602
LOC103023950
Cytochrome c oxidase assembly factor COX19.
     
 0.594
coq3
Ubiquinone biosynthesis O-methyltransferase, mitochondrial; O-methyltransferase that catalyzes the 2 O-methylation steps in the ubiquinone biosynthetic pathway; Belongs to the class I-like SAM-binding methyltransferase superfamily. UbiG/COQ3 family.
      
 0.565
SLC39A1
Solute carrier family 39 member 1.
      
 0.515
Your Current Organism:
Astyanax mexicanus
NCBI taxonomy Id: 7994
Other names: A. mexicanus, Mexican tetra, blind cave fish
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