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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
W5K7L4_ASTMXAAA domain-containing protein. (737 aa)    
Predicted Functional Partners:
phb
Prohibitin.
  
 0.911
NDUFA13
NADH:ubiquinone oxidoreductase subunit A13.
   
 
 0.865
timmdc1
Translocase of inner mitochondrial membrane domain containing 1.
   
   0.861
mrps11
Mitochondrial ribosomal protein S11; Belongs to the universal ribosomal protein uS11 family.
  
 
 0.848
mrpl2
Mitochondrial ribosomal protein L2.
   
 
 0.841
mrps12
Mitochondrial ribosomal protein S12; Belongs to the universal ribosomal protein uS12 family.
  
 
 0.838
LOC103047478
Prohibitin.
  
 0.822
LOC103035142
Prohibitin.
  
 0.822
spg7
SPG7 matrix AAA peptidase subunit, paraplegin.
  
 
0.821
mrpl13
Mitochondrial ribosomal protein L13.
  
 
 0.818
Your Current Organism:
Astyanax mexicanus
NCBI taxonomy Id: 7994
Other names: A. mexicanus, Mexican tetra, blind cave fish
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