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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
W5K8E3_ASTMXTransient receptor potential cation channel, subfamily M, member 1a. (1583 aa)    
Predicted Functional Partners:
Nyx
Nyctalopin.
      
 0.567
Aspm
ASH domain-containing protein.
   
 
 0.422
LOC103022174
Transient receptor potential cation channel, subfamily A, member 1a; Belongs to the transient receptor (TC 1.A.4) family.
     
 0.418
LOC103030165
WD_REPEATS_REGION domain-containing protein.
    
 
 0.410
gnb1
Guanine nucleotide binding protein (G protein), beta polypeptide 1a.
    
 
 0.410
LOC103029911
Guanine nucleotide binding protein (G protein), beta polypeptide 4b.
    
 
 0.410
LOC103031762
Guanine nucleotide binding protein (G protein), beta polypeptide 2.
    
 
 0.410
LOC103023031
Guanine nucleotide binding protein (G protein), beta polypeptide 1b.
    
 
 0.410
W5LBM2_ASTMX
Glutamate receptor, metabotropic 6a.
      
 0.408
nifk
Nucleolar protein interacting with the FHA domain of MKI67.
    
 
 0.404
Your Current Organism:
Astyanax mexicanus
NCBI taxonomy Id: 7994
Other names: A. mexicanus, Mexican tetra, blind cave fish
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