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The next version of STRING is ready for use in your analyses: updated networks across STRING newly available directed regulatory networks a new typed view showing functional, physical, and regulatory edges in one network new clustering options and cluster-based layouts … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103039159Uncharacterized protein. (570 aa)    
Predicted Functional Partners:
ENSAMXP00000039227
Cyclin G associated kinase.
    
 0.865
dnajc10
DnaJ (Hsp40) homolog, subfamily C, member 10.
  
 0.763
CLPB
ClpB homolog, mitochondrial AAA ATPase chaperonin.
  
 
 0.758
Dnajc6
DnaJ (Hsp40) homolog, subfamily C, member 6.
    
 0.736
bag3
BCL2 associated athanogene 3.
   
 0.710
hspa5
Heat shock protein 5; Belongs to the heat shock protein 70 family.
   
0.683
LOC103032477
GrpE-like 2, mitochondrial; Belongs to the GrpE family.
  
 0.678
W5L5S1_ASTMX
GrpE protein homolog; Essential component of the PAM complex, a complex required for the translocation of transit peptide-containing proteins from the inner membrane into the mitochondrial matrix in an ATP-dependent manner; Belongs to the GrpE family.
  
 0.678
Hsp90b1
Heat shock protein 90, beta (grp94), member 1.
  
 0.662
W5KMM6_ASTMX
TSC complex subunit 1b.
  
 0.644
Your Current Organism:
Astyanax mexicanus
NCBI taxonomy Id: 7994
Other names: A. mexicanus, Mexican tetra, blind cave fish
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