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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103023174Dehydrogenase/reductase (SDR family) member 4. (273 aa)    
Predicted Functional Partners:
aldh1a2
Aldehyde dehydrogenase 1 family, member A2; Belongs to the aldehyde dehydrogenase family.
  
 0.931
aldh1a3
Aldehyde dehydrogenase 1 family, member A3; Belongs to the aldehyde dehydrogenase family.
  
 0.931
dhrs3
Dehydrogenase/reductase (SDR family) member 3b.
  
  
0.926
LOC103044660
Cytochrome P450, family 26, subfamily A, polypeptide 1; Belongs to the cytochrome P450 family.
   
 
 0.925
LOC103044922
Dehydrogenase/reductase (SDR family) member 3a; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
     
0.920
LOC103026207
Cytochrome P450, family 27, subfamily C, polypeptide 1; Belongs to the cytochrome P450 family.
   
 
 0.919
W5KRS4_ASTMX
Beta-carotene oxygenase 1, like.
     
 0.918
bola3
Beta-carotene oxygenase 1.
     
 0.918
W5K5R4_ASTMX
Si:ch1073-13h15.3.
  
 
 0.913
LOC103027967
Amino_oxidase domain-containing protein.
  
 
 0.913
Your Current Organism:
Astyanax mexicanus
NCBI taxonomy Id: 7994
Other names: A. mexicanus, Mexican tetra, blind cave fish
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