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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
W5K8L6_ASTMXZinc finger protein 143b. (583 aa)    
Predicted Functional Partners:
sp1
Uncharacterized protein.
    
 
0.629
ENSAMXP00000040725
Transcription initiation factor IIA subunit 2; TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation; Belongs to the TFIIA subunit 2 family.
     
 0.606
LOC103030866
TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor.
    
 0.589
taf11
TAF11 RNA polymerase II, TATA box binding protein (TBP)-associated factor.
    
 0.556
EZH1
Enhancer of zeste 1 polycomb repressive complex 2 subunit.
   
 0.553
ezh2
Enhancer of zeste 2 polycomb repressive complex 2 subunit.
   
 0.553
gtf2b
General transcription factor IIB.
   
 0.545
polr3c
RNA polymerase III subunit C3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 0.526
mrps11
Mitochondrial ribosomal protein S11; Belongs to the universal ribosomal protein uS11 family.
   
 0.512
W5JYC4_ASTMX
TATA box binding protein like 2.
    
 0.498
Your Current Organism:
Astyanax mexicanus
NCBI taxonomy Id: 7994
Other names: A. mexicanus, Mexican tetra, blind cave fish
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