noa1 protein (Astyanax mexicanus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

noa1

Nitric oxide associated 1. (750 aa)

Predicted Functional Partners:

eral1

0.937

PES1

0.909

mrps27

0.897

gtpbp4

0.891

tfb1m

0.889

wdr12

0.885

mrps15

0.863

mrps9

0.847

BOP1

0.844

W5L0F0_ASTMX

0.844

Your Current Organism:

Astyanax mexicanus

NCBI taxonomy Id: 7994
Other names: A. mexicanus, Mexican tetra, blind cave fish

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BOP1	PES1	ENSAMXP00000011870	ENSAMXP00000001242	Ribosome biogenesis protein BOP1; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Pescadillo homolog; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	0.995
BOP1	W5L0F0_ASTMX	ENSAMXP00000011870	ENSAMXP00000013312	Ribosome biogenesis protein BOP1; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	BOP1NT domain-containing protein.	0.778
BOP1	gtpbp4	ENSAMXP00000011870	ENSAMXP00000033651	Ribosome biogenesis protein BOP1; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily.	0.972
BOP1	noa1	ENSAMXP00000011870	ENSAMXP00000004113	Ribosome biogenesis protein BOP1; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Nitric oxide associated 1.	0.844
BOP1	wdr12	ENSAMXP00000011870	ENSAMXP00000028307	Ribosome biogenesis protein BOP1; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Ribosome biogenesis protein WDR12; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	0.995
PES1	BOP1	ENSAMXP00000001242	ENSAMXP00000011870	Pescadillo homolog; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Ribosome biogenesis protein BOP1; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	0.995
PES1	W5L0F0_ASTMX	ENSAMXP00000001242	ENSAMXP00000013312	Pescadillo homolog; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	BOP1NT domain-containing protein.	0.993
PES1	gtpbp4	ENSAMXP00000001242	ENSAMXP00000033651	Pescadillo homolog; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily.	0.998
PES1	noa1	ENSAMXP00000001242	ENSAMXP00000004113	Pescadillo homolog; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Nitric oxide associated 1.	0.909
PES1	tfb1m	ENSAMXP00000001242	ENSAMXP00000041274	Pescadillo homolog; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	rRNA adenine N(6)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family.	0.481
PES1	wdr12	ENSAMXP00000001242	ENSAMXP00000028307	Pescadillo homolog; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Ribosome biogenesis protein WDR12; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	0.999
W5L0F0_ASTMX	BOP1	ENSAMXP00000013312	ENSAMXP00000011870	BOP1NT domain-containing protein.	Ribosome biogenesis protein BOP1; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	0.778
W5L0F0_ASTMX	PES1	ENSAMXP00000013312	ENSAMXP00000001242	BOP1NT domain-containing protein.	Pescadillo homolog; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	0.993
W5L0F0_ASTMX	gtpbp4	ENSAMXP00000013312	ENSAMXP00000033651	BOP1NT domain-containing protein.	Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily.	0.972
W5L0F0_ASTMX	noa1	ENSAMXP00000013312	ENSAMXP00000004113	BOP1NT domain-containing protein.	Nitric oxide associated 1.	0.844
W5L0F0_ASTMX	wdr12	ENSAMXP00000013312	ENSAMXP00000028307	BOP1NT domain-containing protein.	Ribosome biogenesis protein WDR12; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	0.993
eral1	mrps15	ENSAMXP00000053449	ENSAMXP00000043853	Era-like 12S mitochondrial rRNA chaperone 1.	Mitochondrial ribosomal protein S15; Belongs to the universal ribosomal protein uS15 family.	0.990
eral1	mrps27	ENSAMXP00000053449	ENSAMXP00000006449	Era-like 12S mitochondrial rRNA chaperone 1.	Mitochondrial ribosomal protein S27.	0.986
eral1	mrps9	ENSAMXP00000053449	ENSAMXP00000009900	Era-like 12S mitochondrial rRNA chaperone 1.	Mitochondrial ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.	0.991
eral1	noa1	ENSAMXP00000053449	ENSAMXP00000004113	Era-like 12S mitochondrial rRNA chaperone 1.	Nitric oxide associated 1.	0.937