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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103027690Calumenin b. (315 aa)    
Predicted Functional Partners:
utp15
UTP15 small subunit processome component.
   
  
 0.573
LOC103034760
FAM20C golgi associated secretory pathway kinase a.
    
  0.469
LOC103041473
FAM20C golgi associated secretory pathway kinase b.
    
  0.469
LOC103040817
Calreticulin.
   
 
 0.454
LOC103024869
Calreticulin.
   
 
 0.454
W5LQI6_ASTMX
Calreticulin.
   
 
 0.454
fam20b
FAM20B glycosaminoglycan xylosylkinase.
     
 0.444
LOC103024899
Family with sequence similarity 20 member C, like.
    
  0.430
Your Current Organism:
Astyanax mexicanus
NCBI taxonomy Id: 7994
Other names: A. mexicanus, Mexican tetra, blind cave fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.