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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
W5K993_ASTMXTransmembrane protein 50A. (149 aa)    
Predicted Functional Partners:
LEPROTL1
Leptin receptor overlapping transcript like 1.
   
 
 0.870
LEPROT
Leptin receptor overlapping transcript.
   
 
 0.870
gart
Trifunctional purine biosynthetic protein adenosine-3; In the C-terminal section; belongs to the GART family. In the central section; belongs to the AIR synthase family.
      
 0.693
Rplp0
60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10.
      
 0.528
Mrps6
Mitochondrial ribosomal protein S6.
      
 0.513
syf2
SYF2 pre-mRNA-splicing factor.
      
 0.469
LOC103043584
Rh blood group, D antigen; Belongs to the ammonium transporter (TC 2.A.49) family. Rh subfamily.
      
 0.457
lepr
Leptin receptor.
      
 0.450
ENSAMXP00000050308
Uncharacterized protein.
      
 0.404
LOC103039667
RNA binding motif protein 14b.
   
  
 0.401
Your Current Organism:
Astyanax mexicanus
NCBI taxonomy Id: 7994
Other names: A. mexicanus, Mexican tetra, blind cave fish
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