Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
W5K993_ASTMXTransmembrane protein 50A. (149 aa)    
Predicted Functional Partners:
LEPROTL1
Leptin receptor overlapping transcript like 1.
   
 
 0.867
LEPROT
Leptin receptor overlapping transcript.
   
 
 0.867
chmp3
Charged multivesicular body protein 3.
    
 
 0.810
LOC103043584
Rh blood group, D antigen; Belongs to the ammonium transporter (TC 2.A.49) family. Rh subfamily.
      
 0.642
syf2
SYF2 pre-mRNA-splicing factor.
      
 0.637
ENSAMXP00000046366
Zinc finger protein 407.
      
 0.619
Igf2r
Insulin-like growth factor 2 receptor.
    
 
 0.600
gart
Trifunctional purine biosynthetic protein adenosine-3; In the C-terminal section; belongs to the GART family. In the central section; belongs to the AIR synthase family.
      
 0.597
SPIDR
Scaffold protein involved in DNA repair.
      
 0.579
Rplp0
60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10.
      
 0.544
Your Current Organism:
Astyanax mexicanus
NCBI taxonomy Id: 7994
Other names: A. mexicanus, Mexican tetra, blind cave fish
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