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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
W5K9B5_ASTMXCbl proto-oncogene-like 1, E3 ubiquitin protein ligase. (474 aa)    
Predicted Functional Partners:
wtap
WT1 associated protein.
    
 
 0.933
W5KDD3_ASTMX
Vir like m6A methyltransferase associated.
    
 
 0.880
Zc3h13
Uncharacterized protein.
    
 
 0.625
mettl3
Methyltransferase like 3; Belongs to the MT-A70-like family.
    
 
 0.584
rbm15
RNA binding motif protein 15.
      
 0.564
YTHDC2
YTH domain containing 2.
   
  
 0.530
ddx20
DEAD (Asp-Glu-Ala-Asp) box polypeptide 20.
   
  
 0.530
mettl16
Methyltransferase like 16.
      
 0.518
sertad4
SERTA domain containing 4.
    
  0.468
ythdc1
YTH domain containing 1.
      
 0.467
Your Current Organism:
Astyanax mexicanus
NCBI taxonomy Id: 7994
Other names: A. mexicanus, Mexican tetra, blind cave fish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.