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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
W5K9C2_ASTMXUncharacterized protein. (354 aa)    
Predicted Functional Partners:
ENSAMXP00000045230
TERF1 (TRF1)-interacting nuclear factor 2.
    
 0.973
pot1
Protection of telomeres 1 homolog.
    
 0.970
terf1
Telomeric repeat-binding factor; Binds the telomeric double-stranded 5'-TTAGGG-3' repeat.
    
 0.961
mre11
Double-strand break repair protein; Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing.
    
 0.828
Terf2
Telomeric repeat binding factor a.
    
 0.788
Slx4
Uncharacterized protein.
    
 
 0.758
nbn
Nibrin.
    
 0.757
rad50
RAD50 homolog, double strand break repair protein.
    
  0.733
Dclre1b
DNA cross-link repair 1B.
    
 
 0.717
rfc3
Replication factor C (activator 1) 3.
     
 0.707
Your Current Organism:
Astyanax mexicanus
NCBI taxonomy Id: 7994
Other names: A. mexicanus, Mexican tetra, blind cave fish
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