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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tdrd7Tudor domain containing 7 a. (1075 aa)    
Predicted Functional Partners:
piwil1
Piwi-like RNA-mediated gene silencing 1; Belongs to the argonaute family.
   
 0.794
piwil2
Piwi-like RNA-mediated gene silencing 2; Belongs to the argonaute family.
   
 0.765
W5LPY4_ASTMX
Tudor domain containing 9.
   
 0.599
LOC103031423
DND microRNA-mediated repression inhibitor 1.
    
 
 0.580
W5L317_ASTMX
Tudor domain containing 12.
    
 0.570
alpk1
Alpha-type protein kinase domain-containing protein.
   
    0.568
dazl
Deleted in azoospermia-like.
   
  
 0.508
CABP7
Calcium binding protein 7.
    
 0.497
MARF1
Meiosis regulator and mRNA stability factor 1.
      
 0.483
fkbp6
Peptidylprolyl isomerase.
   
 
 0.478
Your Current Organism:
Astyanax mexicanus
NCBI taxonomy Id: 7994
Other names: A. mexicanus, Mexican tetra, blind cave fish
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