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The next version of STRING is ready for use in your analyses: updated networks across STRING newly available directed regulatory networks a new typed view showing functional, physical, and regulatory edges in one network new clustering options and cluster-based layouts … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Abcg8ATP-binding cassette, sub-family G (WHITE), member 8. (631 aa)    
Predicted Functional Partners:
abcg5
ATP-binding cassette, sub-family G (WHITE), member 5.
  
0.999
LOC103033046
3-hydroxy-3-methylglutaryl coenzyme A reductase.
      
 0.581
atp5f1a
ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.
    
 
 0.550
ENSAMXP00000035084
Uncharacterized protein.
   
 0.542
ENSAMXP00000035399
Uncharacterized protein.
   
 0.542
W5KFT4_ASTMX
Nuclear receptor subfamily 1, group H, member 3.
   
 0.541
atp5f1c
ATP synthase subunit gamma.
   
   0.530
LOC103037085
3-hydroxy-3-methylglutaryl coenzyme A reductase.
      
 0.518
Atp5d
ATP synthase F1 subunit delta.
   
   0.514
nr1h4
Nuclear receptor subfamily 1, group H, member 4.
   
 0.513
Your Current Organism:
Astyanax mexicanus
NCBI taxonomy Id: 7994
Other names: A. mexicanus, Mexican tetra, blind cave fish
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