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The next version of STRING is ready for use in your analyses: updated networks across STRING newly available directed regulatory networks a new typed view showing functional, physical, and regulatory edges in one network new clustering options and cluster-based layouts … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
preplProlyl endopeptidase like. (729 aa)    
Predicted Functional Partners:
slc3a1
Solute carrier family 3 member 1.
  
  
 0.702
surf2
Surfeit 2.
      
 0.574
alg14
ALG14 UDP-N-acetylglucosaminyltransferase subunit.
      
 0.564
ENSAMXP00000042673
CUE domain containing 2.
      
 0.563
dpagt1
Uncharacterized protein.
      
 0.539
ENSAMXP00000027582
Si:ch73-54n14.2.
      
 0.538
Camkmt
Calmodulin-lysine N-methyltransferase.
      
 0.538
plekhj1
Pleckstrin homology domain containing, family J member 1.
      
 0.534
ENSAMXP00000032032
Solute carrier family 38 member 6.
      
 0.515
ENSAMXP00000039440
Mannosyltransferase.
      
 0.467
Your Current Organism:
Astyanax mexicanus
NCBI taxonomy Id: 7994
Other names: A. mexicanus, Mexican tetra, blind cave fish
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